What exactly are corn, sunflowers and flax dealing with in this standing water and saturated soils?

MCA_AoA Headers SPECIAL CROPS

By Morgan Cott, Agronomy Extension Specialist – Special Crops, Manitoba Crop Alliance

The crops we grow and work with in Manitoba do not generally do well in extended periods of flooding or saturated soils. Roots and growing points need oxygen to develop, so plant growth is delayed in these conditions. Disease development is also escalated in wet, hot, humid conditions, so that is another impending threat down the road.

Timing has not been ideal for corn. If you have puddling or any degree of flooding or standing water, corn at V5 or smaller is at vulnerable staging for survival. The growing point remains below ground until V6 and I think most corn crops were moving into the V6 at the time of the June 23 heavy rainfalls. It can be very stressful for a crop to have excessive moisture arrive as the growing point emerges from underground. No matter where the growing point is in the plant, if it is below the waterline, conditions become anaerobic and it cannot “breathe.” While photosynthesis can still be occurring in parts of the plant above the waterline, root growth is restricted below the waterline and all nutrient and water intake is hindered.

At this point in the season, I want any standing water to recede quickly and I also want the air temperature to stay mild during that period so there is no rapid growth or additional stress. Already, a week after the heavy rains, there is very visible rapid growth in corn fields across southern Manitoba.

Partially flooded corn field. Photo by Eric Tyschinski, MCA summer student.
Partially flooded corn field. Photo by Eric Tyschinski, MCA summer student.

Sunflowers are equally stressed in anaerobic conditions. Even though their water use is very high, if the plant cannot breathe, it cannot grow. In these times of excess moisture, we don’t want the crop to be in standing water for longer than three days, and cloudy, mild temperatures are best to keep other stresses to a minimum. Unfortunately, sclerotinia development is a significant threat in these conditions, and as the fields dry out, humidity will be high and conditions will be favourable to development, so basal and stalk infections could become severe this year. Keep an eye on stressed sunflower fields to ensure new growth is still coming and plants are still photosynthesizing. 

Effects of excess moisture in flax are exactly what we would guess: it has a low tolerance to severe stresses and will not survive long. The estimate for flax in standing water is about three days before the crop really starts to struggle and yield will be affected. Fortunately, stem root diseases are only a minor issue in flax crops and the wet soil conditions won’t affect this crop as much as it would others with regards to disease intolerance.

With all crops, check for new growth regularly to determine how efficiently the crop is still working and developing. Dig up a few plants to assess root growth. In saturated soils, roots don’t need to grow downward to find moisture, so the benefits of a strong root system later in the season might be diminished. Root health may suffer, which will be identifiable by the colour of the root. These are all good assessments to continue until the soil water subsides, the field starts to dry out and the crop can grow as intended.

Partially flooded flax field. Photo by Eric Tyschinski, MCA summer student.
Partially flooded flax field. Photo by Eric Tyschinski, MCA summer student.

What is the difference between GDD, CHU and RM? Why and when are they each important?

MCA_AoA Headers SPECIAL CROPS

By Morgan Cott, Agronomy Extension Specialist – Special Crops, Manitoba Crop Alliance

This is such a great question and I understand the reasons for asking. First of all, I think it is understood that GDD & CHU both basically measure how efficiently a day’s heat will benefit a growing or developing crop. One main difference between the two measurements is that CHU does account for extremely high temperatures (>30oC) that negatively affect crop development. CHU also looks at both the nighttime low temperatures (4.4oC as the base) and daytime temperatures between only 10oC (base) and 30oC (optimum ceiling).

GDD has historically been used to help estimate certain agronomic events like insect emergence, weed emergence, frost-free days and specific crop staging. My understanding is that CHU is used more for maturity than for the ability to accurately predict these different timelines throughout the season. This might be why certain seed companies use CHU and RM for maturity ranking and GDD for staging references.

Pride Seeds is an example of this, because they break down maturity with both CHU and RM, in addition to two key reproductive stages in GDD accumulation.

When calculating GDD or CHU, you will start from the day after corn was planted. It takes from 100 – 120 GDD for corn to emerge following planting, which is in ideal conditions, including soil moisture and soil temperature, which were variable this spring (and every spring). Start your calculations from day 1 until the day of emergence and see if that fits the above. Now that corn has emerged and is actively growing in your current conditions, continue to monitor accumulating GDD with the following formula. This will give you a head start on expectations during the growing season. When to expect pollination, for example. Note that this GDD accumulation in relation to corn staging is all in relation to each individual hybrid. A shorter season hybrid will need fewer GDD or CHU to reach black layer than a longer season hybrid, of course.

GDD formula
CHU formula

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Making Every Pound Count: Nutrient Management in Corn

2025 Sunflower Crop Survey Results

The Sunflower Crop Survey is led by the National Sunflower Association and carried out by a network of volunteer from universities, government, producers and industry, including Manitoba Crop Alliance (MCA). Participating regions include Manitoba, North Dakota, South Dakota, Minnesota, Nebraska, Kansas, and Colorado, where data is collected on a number of variables and compiled to document sunflower growing conditions, pest challenges and yield. The survey is conducted on alternate years, with fall 2025 being the most recent.

Manitoba and U.S. Survey Overview:

191 Sunflower fields were samples across all participating regions. The following management practices were observed:

  • Sunflower type: 7% confection; 93% oilseed
  • Water Management: 2% irrigated; 98% dryland
  • Tillage: 24% conventional; 21% minimum; 55% no-till

The survey has a large focus on pest pressures. The cumulative pests that were monitored across all locations were as follows:

  • 34% of fields had blackbird damage
  • 11% of fields had seed maggot damage
  • 8% of fields had bud moth damage
  • 8% of fields had sunflower midge damage
  • 14% of fields had long-horned beetle damage. It is important to note that long-horned beetle has not been found in Manitoba during this survey, or in anecdotal scouting events, however there are fields sampled in this survey that are extremely close to the MB-ND border that had long-horned beetle (dectes) damage in both 2025 and 2023.

Manitoba Overview:

12 sunflower fields in 10 municipalities were sampled in Manitoba from the RM of Brokenhead to the RM of Two Borders:

  • Sunflower type: 100% oilseed
  • Water Management: 100% dryland
  • Tillage: 25% conventional; 67% minimum; 8% no-till
  • Row Spacing: 50% had 20” or narrower row spacing, 50% had 22” to 30” row spacing

Each field was surveyed in two locations and a small sample area of two rows by 25 feet was used to gather data in each of the two locations. Pests were recorded, full plants were assessed, and seed samples were taken.

The highest yield in a sampled area was 2,792 lb/ac.

The lowest yield in a sampled area was 983 lb/ac.

The average yield among all 12 fields sampled was 2,000 lb/ac.

Yield-Limiting Factors

  • Seven of the 12 fields were limited mainly by disease, in general.
  • One of the 12 fields was limited mainly by bird presence and feeding.
  • One of the 12 fields was limited mainly by row spacing, as it was a solid-seeded field. This was hard to measure yield on such a small scale with fewer plants per foot of row.
  • Three of the 12 fields were limited mainly by weed pressure, with one of them being specifically limited by kochia infestation. In the 12 fields, weed pressure was generally quite low and not at all a concern in 75% of the fields.
  • Secondary limitations in the 12 fields sampled included wildlife (i.e., elk), lodging, insect, sclerotinia and birds.

Disease Presence and Severity

Sclerotinia:

  • Sclerotinia basal stem rot was minor in all fields sampled. Half of the fields had no basal wilt present. One field had up to eight plants with basal wilt symptoms, which would be estimated at about 8% of the sample size in that field.
  • Sclerotinia mid-stalk rot presence was similar to basal stem rot. Eight fields had zero or just one plant infected; one field had six infections and another had seven infections; two fields had 10 or 12 plants infected, respectively.
  • Sclerotinia head rot were higher, in general. Half of the fields had four or less infected heads; three fields had 5-7 infected heads, one field had 10 infected heads, one field had 12 infected heads and one field had 22 infected heads. This last field did report the lowest yield as well, unsurprisingly.

Downy Mildew:

  • Low incidence among all fields, except one that had four affected plants

Phomopsis:

  • Six of the 12 fields had almost negligible one or zero plants with Phomopsis infections.
  • Five of the 12 fields had from six to 15 stalks infected with Phomopsis.
  • One field had 40 plants with Phomopsis infections, which was roughly 80% incidence in that location.

Phoma:

  • Incidence was much higher and present in relatively high numbers in each of the 12 fields, except for two that had zero incidence.
  • The three highest fields of incidence had 32, 42 and 46 plants with Phoma stem infections.

Rhizopus:

Rhizopus has not been a disease of concern in Manitoba, simply because it can largely go undetected. The last time the sunflower survey was conducted, in 2023, three of eight fields had Rhizopus in the sample set.

Rhizopus can be identified on a sunflower head by the presence of gray, fuzzy mycelium, usually viewed on the face and between developed seeds. The disease prefers warm, humid environments and most often originates via wounds on the back of the sunflower head. Infections do affect yield by limiting seed fill and potentially causing head drop in severe cases.

Rhizopus on sunflower head. Photo courtesy of North Dakota State University.

Sunflower Rust:

Sunflower rust was very minimal in 2025 and was found in four of the 12 fields at very minor severity in September. The highest severity was one field that exhibited 0.75% of leaf area on the top four leaves being affected by rust pustules.

Verticillium Wilt:

Verticillium wilt is also uncommon in sunflower fields in Manitoba, though it was found in the 2025 survey. Symptoms can include leaf mottle, or interveinal chlorosis, and a greenish discolouration on the stem, where further inspection is required. By splitting the stem at the base of the plant, discoloured vascular tissue is visible around the pith.

  • Three fields were found to have Verticillium wilt with five, six and 12 plants infected, respectively.

Insect Presence and Severity

Sunflower Midge:

  • Seven of the 12 fields had Sunflower Midge damage.
  • The field with the greatest damage had seven affected heads.

Sunflower Seed Maggot:

  • Three of 12 fields had Sunflower Seed Maggot damage.
  • Each of the three fields had one plant affected.

Sunflower Bud Moth:

  • Nine of 12 fields had Sunflower Bud Moth damage, specifically on the sunflower head.
  • The field with the greatest damage had 14 affected heads, followed by a field that had 10 affected heads.
  • The remaining seven fields had minor damage noted.

Blackbird Presence and Severity

Blackbird feeding was noted in five of the 12 fields sampled. Assessment is based on the area of the sunflower head with missing seed that has recognizably been fed on by birds. Seed is usually completely missing and sunflower seed shells may be found on or near the plant in question.

All four fields with damage noted were quite minor in the sampled areas, the greatest having about 6.35% of the total head area missing seed.

Other Yield Factors

Actual plant populations of sampled fields ranged from 12,200 to 24,400 plants per acre. Strangely enough, the lowest populated field also had the smallest head size, averaging about 5.75” in diameter. The field with largest head size overall was 8.45” diameter. Generally, head size was smaller in the sampled fields than an average year would see, but this may have been a result of dry growing conditions during head development.

Seed size was reported to be good to excellent and seed fill ranged from 70 – 99% across the 12 fields. Centre seed set was reasonable, but there were some fields that did have up to two inches of the head centre undeveloped, which drastically affects yield.

MCA would like to thank all 12 participants of the Sunflower Survey for allowing us to use your fields for this project. Also, thank you to Manitoba Agriculture oilseeds specialist Sonia Wilson and crop production extension specialist Callum Morrison for your help surveying several fields. Finally, thank you to Dr. Ahmed Abdelmagid, research scientist and oilseed pathologist at AAFC Morden, for surveying several fields and collecting various samples of sunflower diseases to understand the scope of disease presence in Manitoba.

2025 Manitoba Corn Disease Survey Results

Emergency Use Registration: Avian Control For Use as Blackbird Deterrent in Sunflower

Manitoba Agriculture, Manitoba Crop Alliance and Avian Enterprises® are pleased to announce that Avian Control® Bird Repellent has been approved for use to deter blackbird feeding in sunflowers in Canada.

The need for a product used to deter blackbirds from feeding on sunflower crops has been identified as a need in Manitoba due to the significant losses recorded by farmers. Sunflower seeds are particularly vulnerable to predation by blackbirds due to the high nutritional value and easy accessibility.

After nesting, blackbirds form large flocks and begin feeding in grain fields nearby. Feeding begins in sunflowers soon after petal drop and most of the damage occurs during the following three weeks. Peak concentrations of blackbirds occur in mid-September, coinciding with the crop reaching physiological maturity.

Farmers have alternative options to applying a deterrent, like Avian Control ®. Alternate practices include planting far away from roosting areas, like cattail marshes and woodlots, or planting at the same time as neighbours to spread feeding damage over more acres during seed maturity. Insect and weed control will reduce the pre-season food source for blackbirds before the crop reaches a susceptible stage for feeding. Delaying cultivation or harrowing of crop stubble in neighbouring fields increases alternate feeding area for hungry birdlife. Desiccation to advance harvest and getting the crop harvested as soon as possible also reduces exposure.

Another effective management practice is to control cattail production areas, which reduces nesting sites for blackbirds. Managing cattails does take a significant amount of time and should be a collective project for local farmers to deter blackbirds from roosting in a large geographic area, to be effective. Scare methods, like bangers or sound devices, to frighten birds away from the area have achieved different levels of success, but birds tend to start tolerating certain tactics after a period and return to host crops.

How does Avian Control work?

The active ingredient in Avian Control is methyl anthranilate. This active irritates a bird’s trigeminal nerves, which are sensitive to smell and taste, and causes a temporary, non-harmful, but unpleasant sensation to the affected bird’s eyes, beak and throat. The first birds to visit the treated field associate this discomfort with that location and communicate this information to the rest of their flock, instructing them not to feed there.

Methyl anthranilate is a food-grade additive, naturally derived from Concord grapes. It is a non-toxic, non-lethal and humane repellent, recognized as safe for humans and other animals. Due to the nature of this product, it does breakdown on surfaces much quicker than pesticides and will likely need to be applied more than once for continued efficacy.

Crop Specific Instructions for Avian Control

  • Apply Avian Control to ripening sunflowers before damage by blackbirds begins to occur
  • Do not apply when crop is wet or rain is expected
  • Repeat treatment at 6 – 8 day intervals if significant crop damage from blackbirds begins to occur
  • Avian Control may be applied up to the day of harvest
  • Use with non-ionic surfactant at 0.06 – 0.25% v/v
  • DO NOT exceed 5 applications per year

For full Avian Control label on sunflowers, click here.

Please contact Avian Enterprises for more information on Avian Control and product orders:

Jon Stone
President, Avian Enterprises
1 (888) 707-4355
https://aviancontrolinc.com/products/avian-control/ 

Sunflower Survey 2025

In partnership with National Sunflower Association, every other year Manitoba Crop Alliance and Agriculture and Agri-Food Canada participate in a Sunflower Survey. The collaboration includes several states in the U.S. where sunflowers are grown, so participation in Manitoba is beneficial to the dataset. 

Some of the factors included in the survey are:

  • Field analysis: population, head size, seed fill, yield calculations
  • Weed pressure: weed prevalence
  • Insect Pressure: insect incidence and damage severity
  • Disease Pressure: disease incidence and severity
  • Blackbird Presence: percent blackbird damage estimate
  • Other Limiting Factors: environmental, uneven growth, herbicide damage, plant spacing, and more.

Sunflower diseases make up the bulk of the survey since, agronomically, they are the greatest concern to the crop. The requirements are to assess ten diseases in incidence (number of plants) and severity (% damage to affected plants) of sunflower rust, specifically. 

MCA is funding the participation of AAFC’s oilseed and Pulse Crop Pathologist, Dr. Ahmed Abdelmagid, on this project. Dr. Abdelmagid participates in the field survey and also analyzes stalk disease samples from each field to determine various strains present in Manitoba sunflowers.

This survey is important in a “minor” crop for Manitoba in order to help farmers understand the specific pressures they are working against. Together with AAFC and Manitoba Agriculture, we can use the survey data to create extension for farmers and agronomists that will strengthen the crop’s success on the Prairies. Paired with the U.S. data, we are able to make fair comparisons and and identify Manitoba’s successes and areas that need improvement. This leads to more directed research projects in the future and extension work with farmers on specific topics.

The 2025 Sunflower Survey will begin in late August. MCA is looking for several sunflower fields across the province to include. Please contact Morgan Cott at morgan@mbcropalliance.ca or 204-750-2489 if you or someone you know would like to be contact this summer to be involved in the survey. This tends to be a quick visit to collect data on all points mentioned above and the farmer will be kept informed throughout the short process.

Managing Bt Resistant European Corn Borer

European corn borer larvae

European corn borer (ECB) has long been a pest of Manitoba corn crops, but it is not only a nuisance to corn – crops like potatoes and hemp are affected as well. The larval stages of the insect are most economically significant due to their tunneling (boring) capabilities which disrupt the flow of nutrients and water, and the integrity of the stalk. Yields can certainly be affected by ECB presence, around 3-5% yield decrease being possible in standard incidences (5-9 bu/acre in a 175 bushel crop) and increasing in more significant infestations.

Until Bt (Bacillus thuringiensis) traits were introduced to corn in Canada and the United States in 1996, corn farmers would rely on cultural practices and insecticidal control when economic thresholds were met. Cultural practices include crop rotation, residue management – destroying stalks where larvae overwinter successfully, and tillage that buries residue deep enough that larvae cannot survive. Insecticidal control is difficult due to timing between egg hatch and the boring phase. Diligent scouting to monitor egg hatch progress is extremely important to time when most eggs have hatched and larvae have not begun entering the stalk tissue yet. Once larvae reach the 3rd instar stage (7-10 days following hatch), they begin to bore into the stalk, and rarely resurface, rendering insecticide applications ineffective.

The introduction of Bt hybrids allowed farmers to not rely so heavily on residue management and insecticide application. Farmers were able to choose a fitting Bt-traited hybrid for their farm and had to match that hybrid with a refuge, or non-Bt, hybrid in 20% (or more) of the field in a block, strip or perimeter method. In more recent years, seed companies have come out with a 5% refuge system, called refuge-in-a-bag, making the system a lot easier for farmers to adhere to.

Unfortunately, non-compliance with pesticide requirements weakens the system and creates an opening for resistance. While the Bt trait is very strong, there is a small portion of the ECB population that are naturally resistant to the trait that controls the rest of the population. If farmers were to plant 100% Bt hybrids, those resistant populations would thrive and reproduce, eventually being the only population remaining.

BT CORN 101 – Manage Resistance Now
HOW RESISTANCE DEVELOPS – Manage Resistance Now
HOW TO MANAGE INSECT RESISTANCE IN YOUR BT CORN – Manage Resistance Now
MANAGING INSECT RESISTANCE VIA REFUGE PLANTING – Manage Resistance Now

Managing resistance on-farm can feel daunting, but it is very straightforward. Best management practices to avoid European corn borer resistance to Bt traits include:

  • Scout for pests and damage
  • Rotate crops and traits
  • Plant a refuge
  • Manage with insecticides
  • Keep accurate records

If there is a suspected case of ECB resistance in a Bt corn field, the following should be monitored to identify the issue:

  • Scout – both Bt and non-Bt corn for damage
  • Field Investigation – verify trait(s) present, evaluate presence and damage caused by ECB, rule out external reasons for damage
  • Contact Seed Company – seed company representative must be informed if ECB damage is found in Bt-traited crop, where it is determined the pest is resistant
  • Best Management Practices
  • Collect Insects – the seed company will likely arrange for live ECB samples to be taken from affected field(s)
  • Resistance Mitigation – if resistance is confirmed, farmer will be notified of next steps (see Managing Resistance in your Bt Corn)

Resources have been developed to help farmers, agronomists and seed companies identify issues in Bt corn fields as resistance incidents have occurred in Canada. Canadian Corn Pest Coalition is a group of industry members that work to develop extension and support to Canadian farmers and industry as insect issues arise. The CCPC has extensive resources available on their website on this specific topic, as well as other insect pests in corn. It is important for members of the corn industry to be educated on pest pressures that could turn into serious resistance incidents. Together we can improve the longevity of Bt traits so farmers can continue to use them safely and effectively.

Act Now ECB Campaign – Canadian Corn Pest Coalition

Contact your provincial Extension Entomologist (John Gavloski, Manitoba Agriculture) or MCA’s Agronomy Extension Specialist – Special Crops (Morgan Cott) for further information on European corn borer resistance, what to do to avoid it, and how to determine if you see possible resistance.

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